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If you check out CVS of LibVNCServer, everything should build as usual:
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./configure && make
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If your machine complains not having the right version of automake (which should
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not be necessary, because every needed file is checked in), try
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find -name Makefile.in -exec touch {} \;
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and rerun ./configure && make
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If you want to make changes which require automake or autoconf (i.e. you
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check for other headers or add files), you have to have a current
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(>2.50) version of autoconf. Also, you need automake.
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Then, just do
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sh bootstrap.sh
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in LibVNCServer's directory, and you should see plenty of output and
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finally have a complete build of LibVNCServer.
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Happy VNC'ing!
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